inlabru (version 2.6.0)

summary_bru: Deprecated functions in inlabru

Description

These functions still attempt to do their job, but will be removed in a future version.

Usage

summary_bru(object, ...)
iinla.getOption(name = NULL)
iinla.setOption(...)
init.tutorial()
# S3 method for bru_mapper_inla_mesh_2d
ibm_amatrix(...)
# S3 method for bru_mapper_inla_mesh_1d
ibm_amatrix(...)
# S3 method for bru_mapper_index
ibm_amatrix(...)
# S3 method for bru_mapper_linear
ibm_amatrix(...)
# S3 method for bru_mapper_matrix
ibm_amatrix(...)
# S3 method for bru_mapper_factor
ibm_amatrix(...)
# S3 method for bru_mapper_offset
ibm_n(...)
# S3 method for bru_mapper_offset
ibm_values(...)
# S3 method for bru_mapper_offset
ibm_amatrix(...)
# S3 method for bru_mapper_multi
ibm_amatrix(...)
# S3 method for bru_mapper_collect
ibm_amatrix(...)
eval_SpatialDF(...)

Arguments

object

An object obtained from a bru() or lgcp() call

...

Usually passed on to other methods

name

character; an option name

Functions

• summary_bru(): Old summary for an inlabru fit.

  Takes a fitted bru object produced by bru() or lgcp() and creates various summaries from it.

• iinla.getOption(): Use bru_option_get instead.

• iinla.setOption(): Use bru_option_set instead.

• init.tutorial(): Global setting for tutorial sessions.

  Use bru_options_set() to set specific options instead instead. In versions <= 2.1.15, this function set the INLA integration strategy to "eb" to speed up calculations. This is normally not needed since version 2.2.0, since the only the final iteration will use other than "eb".

• ibm_amatrix(bru_mapper_inla_mesh_2d): Replaced by ibm_jacobian()

• ibm_amatrix(bru_mapper_inla_mesh_1d): Replaced by ibm_jacobian()

• ibm_amatrix(bru_mapper_index): Replaced by ibm_jacobian()

• ibm_amatrix(bru_mapper_linear): Replaced by ibm_jacobian()

• ibm_amatrix(bru_mapper_matrix): Replaced by ibm_jacobian()

• ibm_amatrix(bru_mapper_factor): Replaced by ibm_jacobian()

• ibm_n(bru_mapper_offset): Replaced by bru_mapper_const methods

• ibm_values(bru_mapper_offset): Replaced by bru_mapper_const methods

• ibm_amatrix(bru_mapper_offset): Replaced by bru_mapper_const methods

• ibm_amatrix(bru_mapper_multi): Replaced by ibm_jacobian()

• ibm_amatrix(bru_mapper_collect): Replaced by ibm_jacobian()

• eval_SpatialDF(): Replaced by the generic eval_spatial()

Author

Finn Lindgren

Fabian E. Bachl

Examples

if (FALSE) {
# Note: Only run this if you want to change the inlabru options for this session

# Determine current bru defaults:
bo <- bru_options_get()

init.tutorial()

# Check if it worked:
bru_options_get("control.inla")
}