pathTaxonomy

<ul>
<li>PathTaxID NCBI taxonomic ID</li>
<li>PathNCBIResolved is the pathogen found in NCBI</li>
<li>PathGenus pathogen genus</li>
<li>PathFamily pathogen family</li>
<li>PathOrder pathogen order</li>
<li>PathClass pathogen class</li>
<li>PathKingdom pathogen kingdom</li>
</ul>

datasets

David Onstad provided us with this insect disease database, sometimes referred to as the 'Ecological Database of the Worlds Insect Pathogens' or EDWIP. Files have been converted from 'SQL' to csv, and ported into 'R' for easy exploration and analysis. Thanks to the Macroecology of Infectious Disease Research Coordination Network (RCN) for funding and support. Data are also served online in a static format at <https://edwip.ecology.uga.edu/>.

Tad Dallas

insectDisease

Ecological Database of the World's Insect Pathogens

Tad Dallas 

pathTaxonomy function

Format

Cached version of pathogen taxonomy (see vignette for code to build from scratch) — pathTaxonomy

Cached version of pathogen taxonomy (see vignette for code to build from scratch)

pathTaxonomy: Cached version of pathogen taxonomy (see vignette for code to build from scratch)

Description

Usage

Arguments

Format