Provides a wrapper to the PartitionFinder software.
partitionfinder(alignment, user.tree, branchlengths = "linked",
models = "all", model.selection = "BIC", search = "greedy",
exec = "/Applications/PartitionFinderV1.1.1_Mac/PartitionFinder.py")A
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A character string giving the path to the executable (python script).
Lanfear, R., B. Calcott, S.Y.W. Ho, and S. Guindon. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29: 1695-1701.
Lanfear, R., B. Calcott, K. David, C. Mayer, and A. Stamatakis. 2014. Selecting optimal partitioning schemes for phylogenomic datasets. BMC Evolutionary Biology 14: 82.