correct.peptide.ratios: Correct peptide ratios with protein ratios from a separate experiment.
Description
Correct peptide ratios with protein ratios from a separate experiment.Usage
correct.peptide.ratios(ibspectra, peptide.quant.tbl, protein.quant.tbl, protein.group.combined, adjust.variance = TRUE, correlation = 0, recalculate.pvalue = TRUE)
Arguments
ibspectra
IBSpectra object.
peptide.quant.tbl
Calculated with peptideRatios.
protein.quant.tbl
Calculated with proteinRatios.
protein.group.combined
ProteinGroup object generated on both PTM and protein data.
adjust.variance
Adjust variance of ratios.
correlation
Assumed correlation between peptide and protein ratios for variance adjustment.
recalculate.pvalue
Recalculate p-value after variance adjustment.