getPeptideModifContext

protein.group

modif

n.aa.up

n.aa.down

Gets neighboring amino acids around modification which can be used to find enriched motifs.


isobar provides methods for preprocessing, normalization, and
report generation for the analysis of quantitative mass spectrometry
proteomics data labeled with isobaric tags, such as iTRAQ and TMT.
Features modules for integrating and validating PTM-centric datasets
(isobar-PTM). More information on http://www.ms-isobar.org.

Florian P Breitwieser

isobar

Analysis and quantitation of isobarically tagged MSMS proteomics data

getPeptideModifContext function

Gets neighboring amino acids around modification which can be used to find enriched motifs.

getPeptideModifContext: Get context of modification

Description

Usage

Arguments