Usage
maplot.protein(x, relative.to, protein, noise.model = NULL, channels = NULL, xlim = NULL, ylim = NULL, identify = FALSE, add = FALSE, pchs = NULL, log="xy", legend.pos = "topright", names = NULL, legend.cex = 0.8, cols = pchs, ltys = 1, main = protein, xlab = NULL, ylab = NULL, type="ma", show.lm = FALSE, ...)
Arguments
relative.to
a character vector specifying reporter tag names. Either of
length 1 or same length as channels.
protein
Protein group identifier.
noise.model
NoiseModel object.
channels
Reporter tag names.
identify
boolean. If true, identify is called with peptide labels.
pchs
a vector of the same length as channels. See pch in
plot.default.
log
a character string which contains x if the x axis is to
be logarithmic, y if the y axis is to be logarithmic and
xy or yx if both axes are to be logarithmic.
names
a character string of the same length as channels, legend text.
cols
a vector of the same length as channels. See col in
plot.default.
ltys
a vector of the same length as channels. See lty in
plot.default.
main
a main title for the plot
xlab
a label for the x axis, defaults to a description of x.
ylab
a label for the y axis, defaults to a description of y.