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isomiRs

analyze isomiRs from seqbuster tool

It needs R > 3.2

###Installation

Inside R:

library(devtools)
library(roxygen2)
devtools::install_github("lpantano/isomiRs", ref="master")
library(isomiRs)
openVignette(isomiRs)

or look at the vignette here: http://lpantano.github.io/isomiRs/vignettes/isomiR-intro.pdf

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Version

Version

1.0.3

License

MIT + file LICENSE

Maintainer

Last Published

February 15th, 2017

Functions in isomiRs (1.0.3)

Example of IsomirDataSeq with human brain miRNA counts data

Partial Least Squares Discriminant Analysis for IsomirDataSeq

Normalize count matrix

Heatmap of the top expressed isomiRs

Plot the amount of isomiRs in different samples

Create count matrix with different summarizing options

IsomirDataSeq-class

Class that contains all isomiRs annotation for all samples

IsomirDataSeqFromFiles

IsomirDataSeqFromFiles loads miRNA annotation from seqbuster tool

Method to select specific miRNAs from an IsomirDataSeq object.

Differential expression analysis with DESeq2

isoPlotPosition

Plot nucleotides changes at a given position

Plot components from isoPLSDA analysis (pairs plot)

Accessors for the count matrix of a IsomirDataSeq object.