stanfit_to_named_mcmclist

When running <code>run_mcmc</code> with <code>stanfit = FALSE</code> (typically for
debugging purposes), the parameters in the returned <code>stanfit</code> object
are named using a base label and an indexing system. This function provides
a way to convert this <code>stanfit</code> object into a more conventional
<code>mcmc.list</code> object where parameters are named according to their role
in the original network model used when running <code>run_mcmc</code>.

Implements Bayesian models to analyze data from tracer addition
experiments. The implemented method was originally described in the article
"A New Method to Reconstruct Quantitative Food Webs and Nutrient Flows from
Isotope Tracer Addition Experiments" by López-Sepulcre et al. (2020)
<doi:10.1086/708546>.

Mattieu Bruneaux

isotracer

Isotopic Tracer Analysis Using MCMC

Andrés López-Sepulcre

Matthieu Bruneaux

stanfit_to_named_mcmclist function

<dl><dt>stanfit</dt>
<dd>A stanfit object returned by <code>rstan::sampling</code>.</dd></dl>

Arguments

Convert a Stanfit object to a nicely named mcmc.list object — stanfit_to_named_mcmclist

<dl>

<dt>stanfit</dt>
<dd>A stanfit object returned by <code>rstan::sampling</code>.</dd>

</dl>

stanfit_to_named_mcmclist: Convert a Stanfit object to a nicely named mcmc.list object

Description

Usage

Value

Arguments