hsa04022_info

An object of class <code>pathway_info</code> for the <code>pathway</code>
with KEGG identifier hsa04020.

datasets

Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel).

Juliane Manitz

kangar00

Kernel Approaches for Nonlinear Genetic Association Regression

Benjamin Hofner

Stefanie Friedrichs

Patricia Burger

Ngoc Thuy Ha

Saskia Freytag

Heike Bickeboeller

hsa04022_info function

A <code>pathway_info</code> object including information on 163 genes.<dl>
 <dt>info</dt>
<dd>a <code>data frame</code> including information on genes included in 
pathway. Has columns 'pathway', 'gene_start', 'gene_end', 'chr', and 'gene'</dd>
</dl>

Format

Example pathway_info object for pathway hsa04022. — hsa04022_info

A <code>pathway_info</code> object including information on 163 genes.<dl>
 <dt>info</dt>
<dd>a <code>data frame</code> including information on genes included in 
pathway. Has columns 'pathway', 'gene_start', 'gene_end', 'chr', and 'gene'</dd>


</dl>

hsa04022_info: Example `pathway_info` object for `pathway` hsa04022.

Description

Usage

Arguments

Format

Examples