set_one,matrix-method

This function sets all entries in a <code>matrix</code> bigger than 1 to 1 and all entries 
smaller than -1 to -1. It is called by <code>get_network_matrix</code>.
(For internal use)

internal

Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel).

Juliane Manitz

kangar00

Kernel Approaches for Nonlinear Genetic Association Regression

Benjamin Hofner

Stefanie Friedrichs

Patricia Burger

Ngoc Thuy Ha

Saskia Freytag

Heike Bickeboeller

set_one,matrix-method function

<dl><dt>x</dt>
<dd>numeric <code>matrix</code> representing the network adjacency matrix.</dd></dl>

Arguments

Author

Helper function to set matrix entries to 0/1/-1 only — set_one,matrix-method

<dl>

<dt>x</dt>
<dd>numeric <code>matrix</code> representing the network adjacency matrix.</dd>

</dl>

Helper function to set <code>matrix</code> entries to 0/1/-1 only

set_one,matrix-method: Helper function to set `matrix` entries to 0/1/-1 only

Description

Usage

Value

Arguments

Author

See Also