kebabs (version 1.6.2)

ExplicitRepresentationAccessors: ExplicitRepresentation Accessors

Description

ExplicitRepresentation Accessors

Usage

## S4 methods for signature 'ExplicitRepresentation'
## x[i,j]
## further methods see below
## S3 method for class 'matrix,dgRMatrix':
%*%(x, y)
## S3 method for class 'dgRMatrix,numeric':
%*%(x, y)

Arguments

x

an explicit representation in dense or sparse format

i

integer vector or character vector with a subset of the sample indices or names

y

in the first case and explicit representation and x is a matrix, for the second case a numeric matrix and x is an explicit representation

j

integer vector or character vector with a subset of the feature indices or names

Value

• see details above

References

http://www.bioinf.jku.at/software/kebabs J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: http://dx.doi.org/10.1093/bioinformatics/btv176{10.1093/bioinformatics/btv176}.