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kernscr

kernscr is a R package which performs score test for genetic pathway analysis in the presence of semi-competing risks.

Neykov M, Hejblum BP and Sinnott JA (2018). Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks. Statistical Methods in Medical Research, 27(4): 1099-1114. <doi: 10.1177/0962280216653427>

Installation

You can install the released version of kernscr from CRAN with:

install.packages("kernscr")

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Version

Install

install.packages('kernscr')

Monthly Downloads

201

Version

1.0.6

License

GPL-2 | file LICENSE

Maintainer

Boris P. Hejblum

Last Published

April 17th, 2023

Functions in kernscr (1.0.6)

compute_all_tests

Testing pathway risk association
dM

dM
VTM

VTM
cancer_pathways

70 pathways from MSigDB c2CP
PI_1

PI_2
PI_0

PI_0
kernscr-package

kernscr: a package to perform Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks
findRhoInterval

Find an interval constraining the rho parameter for a non linear kernel
kernelEval

Evaluation of kernels
M_vec

M vector and its perturbation
Ahat

Ahat computation
sim_SCR_data

Data Simulation Function
lambda

Lambda and its perturbation
PI_2

PI_2
plot_kernscr_methodsplit

Plotting functions used in the manuscript