kronosOut-class

kronosOut is the main output container of the main 'kronos' functions.

The goal of 'kronos' is to provide an easy-to-use framework to analyse circadian or otherwise rhythmic data using the familiar R linear modelling syntax, while taking care of the trigonometry under the hood.

Thomaz Bastiaanssen

kronos

Microbiome Oriented Circadian Rhythm Analysis Toolkit

Sarah-Jane Leigh

kronosOut-class function

<dl>
<dt><code>input</code></dt>
<dd>A data.frame with the data that was fed to the main workhorse function as 'x'</dd></dl>
<dt><code>fit</code></dt>
<dd>An lm fit for the entire model for the purpose of assessing differential rhytmicity.</dd>
<dt><code>to_plot</code></dt>
<dd>A data.frame with the traces required to plot individual sinusoid curves</dd>
<dt><code>ind_fit</code></dt>
<dd>A data.frame with the parameters from individual rhythmic model fits.</dd>
<dt><code>pairwise_t</code></dt>
<dd>A data.frame with the p.values for pairwise comparisons, if applicable.</dd>

Slots

An S4 class to contain all output parameters and plotting information from the 'kronos' main pipeline — kronosOut-class

<dl>
<dt><code>input</code></dt>
<dd>A data.frame with the data that was fed to the main workhorse function as 'x'</dd>


<dt><code>fit</code></dt>
<dd>An lm fit for the entire model for the purpose of assessing differential rhytmicity.</dd>


<dt><code>to_plot</code></dt>
<dd>A data.frame with the traces required to plot individual sinusoid curves</dd>


<dt><code>ind_fit</code></dt>
<dd>A data.frame with the parameters from individual rhythmic model fits.</dd>


<dt><code>pairwise_t</code></dt>
<dd>A data.frame with the p.values for pairwise comparisons, if applicable.</dd>


</dl>

kronosOut-class: An S4 class to contain all output parameters and plotting information from the 'kronos' main pipeline

Description

Arguments

Slots