labdsv (version 2.1-0)

dropspc: Dropping Species with Few Occurrences

Description

Eliminates species from the community data frame that occur fewer than or equal to a threshold number of occurrences.

Usage

dropspc(comm,minocc=0,minabu=0)

Value

Produces a new community data frame

Arguments

comm

a community data frame

minocc

the threshold number of occurrences to be dropped

minabu

the threshold minimum abundance to be dropped

Author

David W. Roberts

Details

The function is useful for eliminating species (columns) from community data frames which never occur, which often happens if you eliminate plots, and those plots are the only ones that contain that species. In addition, many species are rare in data frames, and some algorithms (especially dissimilarity functions and table sorting routines) benefit from smaller, simpler data frames.

Examples

data(bryceveg) # returns a data frame called bryceveg
newveg <- dropspc(bryceveg,5) # deletes species which 
                              # occur 5 or fewer times