Usage
## S3 method for class 'InformativeTesting':
plot(x, ..., type = c("lr","ppv"),
main = "main", xlab = "xlabel",
ylab = "Frequency", freq = TRUE, breaks = 15, cex.main = 1,
cex.lab = 1, cex.axis = 1, col = "grey", border = par("fg"),
vline = TRUE, vline.col = c("red", "blue"), lty = c(1,2),
lwd = 1, legend = TRUE, bty = "o", cex.legend = 0.75,
loc.legend = "topright")Arguments
x
The output of the InformativeTesting() function
type
If "lr", a distribution of the first-level
bootstrapped LR values is plotted. If "ppv" a distribution of
the bootstrapped plug-in p-values is plotted.
main
The main title(s) for the plot(s).
xlab
A label for the x axis, default depends on input type.
ylab
A label for the y axis.
freq
Logical; if TRUE, the histogram graphic is a representation of
frequencies, the counts component of the result; if FALSE,
probability densities, component density, are plotted
(so that the histogram has a total area of one). Th
cex.main
The magnification to be used for main titles relative to the
current setting of cex.
cex.lab
The magnification to be used for x and y labels relative to
the current setting of cex.
cex.axis
The magnification to be used for axis annotation relative to
the current setting of cex.
col
A colour to be used to fill the bars. The default of NULL
yields unfilled bars.
border
Color for rectangle border(s). The default means par("fg").
vline
Logical; if TRUE a vertical line is drawn
at the observed LRT value. If
double.bootstrap = "FDB" a vertical line is drawn at the 1-p* quantile
of the second-level LRT values, where p* is the first-level bootstrappe
vline.col
Color(s) for the vline.LRT.
lty
The line type. Line types can either be specified as an integer
(0=blank, 1=solid (default), 2=dashed, 3=dotted, 4=dotdash,
5=longdash, 6=twodash) or as one of the character strings
"blank", "solid", "dashed", "dotted", "dotdash", "longdas
lwd
The line width, a positive number, defaulting to 1.
legend
Logical; if TRUE a legend is added to the plot.
bty
A character string which determined the type of box which is drawn
about plots. If bty is one of "o" (the default), "l", "7", "c", "u", or "]"
the resulting box resembles the corresponding upper case letter. A value of
"n" suppresses the bo
cex.legend
A numerical value giving the amount by which the legend
text and symbols should be magnified relative to the default.
This starts as 1 when a device is opened, and is reset when the layout
is changed.
loc.legend
The location of the legend, specified by a single
keyword from the list "bottomright", "bottom",
"bottomleft", "left", "topleft", "top",
"topright",