Usage
## S3 method for class 'InformativeTesting':
plot(x, ..., type = "all",
main = "main", xlab = "xlabel",
ylab = "ylabel", freq = TRUE, cex.main = 1,
cex.lab = NULL, cex.axis = NULL, nclass = NULL,
col = "grey", border = par("fg"), axes = TRUE,
vline = FALSE, vline.col = c("red", "blue"), lty = c(1,2),
lwd = 1, legend = FALSE, cex.legend = 0.75,
loc.legend = "topright")Arguments
x
The output of the InformativeTesting() function
type
If "all", all available plots are plotted simultaneously.
If LRT.A or LRT.B, a distribution of the first-level
bootstrapped LRT values is plotted. If ppvalues.A or
ppvalues.B,
main
The main title(s) for the plot(s)
xlab
A label for the x axis, default depends on input type.
ylab
A label for the y axis, default is "frequency".
freq
Logical; if TRUE, the histogram graphic is a representation of
frequencies, the counts component of the result; if FALSE,
probability densities, component density, are plotted
(so that the histogram has a total area of one). Th
cex.main
The magnification to be used for main titles relative to the
current setting of cex. The default is set to 1.
cex.lab
The magnification to be used for x and y labels relative to
the current setting of cex.
cex.axis
The magnification to be used for axis annotation relative to
the current setting of cex.
nclass
Integer; number of classes.
col
A colour to be used to fill the bars. The default of NULL
yields unfilled bars.
border
Color for rectangle border(s). The default means par("fg").
axes
Logical; if TRUE the x and y axis are plotted.
vline
Logical; if TRUE a vertical line is drawn
at the observed LRT value. If double.bootstrap = "FDB" a vertical
line is drawn at the 1-p* quantile of the second-level LRT values, where p*
is the first-level boots
vline.col
Color for the vline.LRT. Default is set on "red"
lty
The line type. Line types can either be specified as an integer
(0=blank, 1=solid (default), 2=dashed, 3=dotted, 4=dotdash,
5=longdash, 6=twodash) or as one of the character strings
"blank", "solid", "dashed", "dotted", "dotdash", "longdas
lwd
The line width, a positive number, defaulting to 1.
legend
Logical; if TRUE a legend is added to the plot.
cex.legend
A numerical value giving the amount by which the legend
text and symbols should be magnified relative to the default.
This starts as 1 when a device is opened, and is reset when the layout
is changed
loc.legend
The location of the legend, specified by a single
keyword from the list "bottomright", "bottom",
"bottomleft", "left", "topleft", "top",
"topright",