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les (version 1.22.0)

Identifying Differential Effects in Tiling Microarray Data

Description

The 'les' package estimates Loci of Enhanced Significance (LES) in tiling microarray data. These are regions of regulation such as found in differential transcription, CHiP-chip, or DNA modification analysis. The package provides a universal framework suitable for identifying differential effects in tiling microarray data sets, and is independent of the underlying statistics at the level of single probes.

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Version

Version

1.22.0

License

GPL-3

Maintainer

Julian Gehring

Last Published

February 15th, 2017

Functions in les (1.22.0)

threshold,Les-method

threshold
regions,Les-method

regions
les-package

Identifying Differential Effects in Tiling Microarray Data
spikeInStat

Spike-in ChIP-chip data set
plot,Les-method

plot method for class Les
Les,ANY,numeric-method

Les
weighting

Weighting functions
estimate,Les-method

estimate
spikeInData

Spike-in ChIP-chip data set
Les-class

Class 'Les'
ci,Les-method

ci
les-internal

Internal functions of the 'les' package.
chi2,Les-method

chi2
export,Les-method

export