A function to run the MCMC algorithm for aggregated spatial point process data. Not for general purpose use.
MALAlgcpAggregateSpatial.PlusPars(
mcmcloop,
inits,
adaptivescheme,
M,
N,
Mext,
Next,
mcens,
ncens,
formula,
Zmat,
model.priors,
model.inits,
fftgrid,
spatial.covmodel,
nis,
cellarea,
spatialvals,
cellInside,
MCMCdiag,
gradtrunc,
gridfun,
gridav,
d,
spdf,
ol,
Nfreq
)details of the mcmc loop
initial values
the adaptive MCMC scheme
number of grid cells in x direction
number of grid cells in y direction
number of extended grid cells in x direction
number of extended grid cells in y direction
centroids in x direction
centroids in y direction
a formula object of the form X ~ var1 + var2 etc.
design matrix constructed using getZmat
model priors, constructed using lgcpPrior
initial values for the MCMC
an objects of class FFTgrid, see genFFTgrid
spatial covariance model, consructed with CovFunction
cell counts on the etended grid
the cell area
inerpolated poisson offset on fft grid
0-1 matrix indicating inclusion in the observation window
not used
gradient truncation parameter
used to specify other actions to be taken, e.g. dumping MCMC output to disk.
used for computing Monte Carlo expectations online
matrix of toral distances
the SpatialPolygonsDataFrame containing the aggregate counts as a variable X
overlay of fft grid onto spdf
frequency at which to resample nis
output from the MCMC run