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lineup (version 0.34-1)

Lining up two sets of measurements

Description

Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues.

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Version

Install

install.packages('lineup')

Monthly Downloads

235

Version

0.34-1

License

GPL-3

Maintainer

Karl W Broman

Last Published

October 15th, 2012

Functions in lineup (0.34-1)

plotEGclass

Plot classifier of eQTL genotype from expression data

combinedist

Combine distance matrices into a single such

find.gene.pseudomarker

Find nearest peudomarker to each gene

disteg

Calculate distance between two gene expression data sets

lineupversion

Installed version of R/lineup

fscale

Standardize the columns of a matrix

findCommonID

Find individuals in common between a cross and a phenotype matrix

distee

Calculate distance between two gene expression data sets

calc.locallod

Calculate LOD score at physical position of each gene

plot2dist

Plot two sets of inter-individual distances against one another

omitdiag

Replace the diagonal in a distance matrix with missing values

summary.lineupdist

Summarize inter-individual distances

subset.lineupdist

Subsetting distance matrix

corbetw2mat

Calculate correlations between columns of two matrices

pulldiag

Pull out the diagonal from a distance matrix

plot.lineupdist

Plot summary of inter-individual distances

lineup-internal

Internal lineup functions