lmebreed-class

fitted,lmebreed-method

ranef,lmebreed-method

residuals,lmebreed-method

A mixed-effects model fit by <code>lmebreed</code>.
 This class extends class <code>"<a href="/link/merMod?package=lme4breeding&version=1.0.50" data-mini-rdoc="lme4breeding::merMod">merMod</a>"</code> class and includes one
 additional slot, <code>relfac</code>, which is a list of (left) Cholesky
 factors of the relationship matrices derived from 
 <code>"lmebreed"</code> objects.

classes

Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the
'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.

Giovanny Covarrubias-Pazaran

lme4breeding

Relationship-Based Mixed-Effects Models

lmebreed-class function

Objects are created by calls to the
 <code>lmebreed</code> function.

Objects from the Class

<dl>
 <dt><code>relfac</code>:</dt>
<dd>A list of relationship matrix factors. All
 other slots are inherited from class <code>"<a href="/link/merMod?package=lme4breeding&version=1.0.50" data-mini-rdoc="lme4breeding::merMod">merMod</a>"</code>.</dd> <dt><code>udd</code>:</dt>
<dd>A list of eigen decomposition elements. All
 other slots are inherited from class <code>"<a href="/link/merMod?package=lme4breeding&version=1.0.50" data-mini-rdoc="lme4breeding::merMod">merMod</a>"</code>.</dd> 
</dl>

Slots

Class <code>"<a href="/link/merMod?package=lme4breeding&version=1.0.50" data-mini-rdoc="lme4breeding::merMod">merMod</a>"</code>, directly.

Extends

<dl>
 <dt>fitted</dt>
<dd><code>signature(object = "lmebreed")</code>: actually a
 non-method in that <code>fitted</code> doesn't apply to such objects
 because of the pre-whitening.</dd> <dt>ranef</dt>
<dd><code>signature(object = "lmebreed")</code>: incorporates
 the relationship into the random effects as returned for the object
 viewed as a <code>"<a href="/link/merMod?package=lme4breeding&version=1.0.50" data-mini-rdoc="lme4breeding::merMod">merMod</a>)"</code> object.</dd> <dt>residuals</dt>
<dd><code>signature(object = "lmebreed")</code>: also a
 non-method for the same reason as <code>fitted</code></dd> 
</dl>

Methods

A mixed-effects model fit by <code>lmebreed</code>.
 This class extends class <code>"<a href='https://rdrr.io/pkg/lme4/man/merMod-class.html'>merMod</a>"</code> class and includes one
 additional slot, <code>relfac</code>, which is a list of (left) Cholesky
 factors of the relationship matrices derived from 
 <code>"lmebreed"</code> objects.

Relationship-based mixed-effects model fits — lmebreed-class

<dl>
 <dt><code>relfac</code>:</dt>
<dd>A list of relationship matrix factors. All
 other slots are inherited from class <code>"<a href='https://rdrr.io/pkg/lme4/man/merMod-class.html'>merMod</a>"</code>.</dd>

 <dt><code>udd</code>:</dt>
<dd>A list of eigen decomposition elements. All
 other slots are inherited from class <code>"<a href='https://rdrr.io/pkg/lme4/man/merMod-class.html'>merMod</a>"</code>.</dd>

 
</dl>

Class <code>"<a href='https://rdrr.io/pkg/lme4/man/merMod-class.html'>merMod</a>"</code>, directly.

<dl>
 <dt>fitted</dt>
<dd><code>signature(object = "lmebreed")</code>: actually a
 non-method in that <code>fitted</code> doesn't apply to such objects
 because of the pre-whitening.</dd>

 <dt>ranef</dt>
<dd><code>signature(object = "lmebreed")</code>: incorporates
 the relationship into the random effects as returned for the object
 viewed as a <code>"<a href='https://rdrr.io/pkg/lme4/man/merMod-class.html'>merMod</a>)"</code> object.</dd>

 <dt>residuals</dt>
<dd><code>signature(object = "lmebreed")</code>: also a
 non-method for the same reason as <code>fitted</code></dd>

 
</dl>

lmebreed-class: Relationship-based mixed-effects model fits

Description

Arguments

Objects from the Class

Slots

Extends

Methods

See Also

Examples