sequences2transmatrix

Calculates the transition matrix by counting occurrences of tuples in given vector list

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Chris Verschelden

Charly Marty

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

sequences2transmatrix function

<dl><dt>sequences</dt>
<dd>Sequences to be analyzed, can be a list of vectors, or a vector</dd></dl>

Arguments

Transition matrix from sequence(s) — sequences2transmatrix

<dl>

<dt>sequences</dt>
<dd>Sequences to be analyzed, can be a list of vectors, or a vector</dd>

</dl>

sequences2transmatrix: Transition matrix from sequence(s)

Description

Usage

Value

Arguments

Details

Examples