stationary_distribution

Calculates stationary distribution of markov transition matrix by use of eigenvectors of length 1

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Chris Verschelden

Charly Marty

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

stationary_distribution function

<dl><dt>m</dt>
<dd>Transition Matrix [matrix object]</dd></dl>

Arguments

Stationary distribution [Markov chains] — stationary_distribution

<dl>

<dt>m</dt>
<dd>Transition Matrix [matrix object]</dd>

</dl>

stationary_distribution: Stationary distribution [Markov chains]

Description

Usage

Value

Arguments

Examples