CharSequence2ScoreSequence

Convert a character sequence into a score sequence. See CharSequences2ScoreSequences() function for several sequences

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Chris Verschelden

Charly Marty

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

CharSequence2ScoreSequence function

<dl><dt>charseq</dt>
<dd>a character sequence, given as a string</dd>
<dt>dictionary</dt>
<dd>a data.frame with rownames containing letters, first column containing associated scores, optional second column containing associated probabilities</dd></dl>

Arguments

Convert a character sequence into a score sequence — CharSequence2ScoreSequence

<dl>

<dt>charseq</dt>
<dd>a character sequence, given as a string</dd>


<dt>dictionary</dt>
<dd>a data.frame with rownames containing letters, first column containing associated scores, optional second column containing associated probabilities</dd>

</dl>

CharSequence2ScoreSequence: Convert a character sequence into a score sequence

Description

Usage

Value

Arguments

See Also

Examples