CharSequences2ScoreSequences

Convert several character sequence into score sequences. For only one sequence see CharSequence2ScoreSequence() function.

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Chris Verschelden

Charly Marty

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

CharSequences2ScoreSequences function

<dl><dt>sequences</dt>
<dd>a list of character sequences given as string</dd>
<dt>dictionary</dt>
<dd>a data.frame with rownames containing letters, first column containing associated scores, optional second column containing associated probabilities</dd></dl>

Arguments

Convert several character sequences into score sequences — CharSequences2ScoreSequences

<dl>

<dt>sequences</dt>
<dd>a list of character sequences given as string</dd>


<dt>dictionary</dt>
<dd>a data.frame with rownames containing letters, first column containing associated scores, optional second column containing associated probabilities</dd>

</dl>

CharSequences2ScoreSequences: Convert several character sequences into score sequences

Description

Usage

Value

Arguments

See Also

Examples