HydroScore

<p>Provides integer scores related to an hydrophobicity level of each amino acid. This score function is inspired by the Kyte and Doolittle (1982) scale.</p>

datasets

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/>  ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

David Robelin

localScore

Package for Sequence Analysis by Local Score

Sebastian Simon

Chris Verschelden

Charly Marty

Sabine Mercier

Sebastien Dejean

The authors of Eigen the library for the included version of Eigen 

HydroScore function

<p>A score function for the 20 amino acid</p>

Format

Dictionary — HydroScore

Dictionary

HydroScore: Dictionary

Description

Usage

Arguments

Format

Examples