lumi (version 2.24.0)

boxplot,MethyLumiM-method: boxplot of a MethyLumiM object

Description

Creating a hdr.boxplot of the M-value in a MethyLumiM object

Usage

"boxplot"(x, main, logMode = TRUE, ...)

Arguments

x

a MethyLumiM-class object

main

title of the boxplot

logMode

only works when the dataType of x is "Intensity"

...

optional arguments to bwplot.

Details

Because the density plot of M-values usually includes two modes, using the traditional boxplot cannot accurately represent the distribution of the data. Here we use violin plot to show the density of M-values by samples

See Also

MethyLumiM-class, panel.violin and boxplot,ExpressionSet-method

Examples

## load example data
data(example.lumiMethy)
boxplot(example.lumiMethy)