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lvm4net (version 0.3)

PPInet: PPI genetic and physical interactions data

Description

The dataset contains two undirected networks formed by genetic and physical protein-protein interactions (PPI) between 67 Saccharomyces cerevisiae proteins. The genetic interactions network is formed of 294 links, and the physical interactions network is formed of 190 links. The data were downloaded from the Biological General Repository for Interaction Datasets (BioGRID) database http://thebiogrid.org/

Arguments

Format

Two binary adjacency matrices

Details

  • PPIgen Binary adjacency matrix containing genetic interactions between 67 proteins.

  • PPIphy Binary adjacency matrix containing physical interactions between 67 proteins.

References

Gollini, I., and Murphy, T. B. (2016), 'Joint Modelling of Multiple Network Views', Journal of Computational and Graphical Statistics, 25(1), 246-265 http://arxiv.org/abs/1301.3759.

See Also

PPIgen, PPIphy