mQTL.NMR (version 1.6.0)

Top_SRV.plot: Plot top SRV clusters

Description

Plot lines defined by SRV on top SRV clusters

Usage

Top_SRV.plot(file1,file2,results,met,intMeth,clustidx)

Arguments

file1

a text file with NMR data

file2

a text file with SRV clusters

results

a list containinig results of mQTL mapping

met

a character specifying the summarizing statistical measure of peaks

intMeth

a charcter specifying summarizing method across samples ("mean" or "max")

clustidx

index specifying the SRV cluser of interest (optinal)

See Also

SRV.plot

Examples

load_datafiles()

load(results)

# Format data

format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)

## Plot SRV profile
Top_SRV.plot(file1=cleandat,file2=rectangle_SRV,results=results,met=met,intMeth="mean")