mQTL.NMR (version 1.6.0)

summary_mQTL: Function to summarize the mQTL mapping results of all the runs and their differences

Description

This function generates a table containing the genetic markers and thier associated metabolomic variables and estimated LOD score.

Usage

summary_mQTL(results, redfile,Th = 5)

Arguments

results

a list sepcifying the mQTL mapping results

redfile

a text file containing the parameters of identified clusters(.PPM file)

Th

a numerical paramater indicating the threshold of top accepted score (LOD or -log10(p-value))

Value

returns Summaries

Details

Generates a text file containing a table of summary of mQTL mapping results

See Also

pre_mQTL

Examples

    load_datafiles()
    load(results)

    Th<-10 ## LOD threshold
    summary_mQTL(results,rectangle_SRV,Th)## summarizes mQTL results in a table