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Plots maf summary.
plotmafSummary(maf, file = NULL, rmOutlier = TRUE, width = 6, height = 5, addStat = NULL, showBarcodes = FALSE, textSize = 2, color = NULL)
an MAF object generated by read.maf
MAF
read.maf
If given pdf file will be generated.
If TRUE removes outlier from boxplot.
plot parameter for output file.
Can be either mean or median. Default NULL.
include sample names in the top bar plot.
font size if showBarcodes is TRUE. Default 2.
named vector of colors for each Variant_Classification.
Prints plot.
read.maf MAF
# NOT RUN { laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools") laml <- read.maf(maf = laml.maf, useAll = FALSE) plotmafSummary(maf = laml, addStat = 'median') # }
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