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manhattanly

The goal of manhattanly is to create interactive manhattan, Q-Q and volcano plots

Installation

You can install manhattanly from CRAN:

install.packages("manhattanly")

Alternatively, you can install the development version of manhattanly from GitHub with:

install.packages("devtools")
devtools::install_github("sahirbhatnagar/manhattanly", build_vignettes = TRUE)

Vignette

See the online vignette for example usage of the functions.

Credit

This package is inspired by the qqman R package. The pre-processing of the data in the manhattanly package is based on the qqman::manhattan and qqman::qq functions.

The splitting of the tasks into data pre-processing and plot rendering is inspired by the heatmaply R package.

Related Work

Contact

Latest news

You can see the most recent changes to the package in the NEWS.md file

Code of Conduct

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

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Version

Install

install.packages('manhattanly')

Monthly Downloads

451

Version

0.3.0

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Maintainer

Last Published

April 26th, 2021

Functions in manhattanly (0.3.0)

manhattanr

Creates a manhattanr object
qqr

Creates a qq object
volcanoly

Creates a plotly volcano plot
qqly

Creates a plotly Q-Q plot
significantSNP

Character vector of SNPs to highlight
HapMap

Subset of HapMap data with simulated GWAS results
manhattanly

Creates a plotly manhattan plot
volcanor

Creates a volcano object