manta (version 1.18.0)

compbiasTest: compositional bias test

Description

.

Usage

compbiasTest(x, pair=nv(levels(x$samples$group)[1:2] , c('ref','obs')), meta.lev='phylum',  meta.lev.lim=min(10,nrow(x$meta.sum[[meta.lev]])))

Arguments

x

a MANTA object.

pair

named vector of the pair of conditions of interest

meta.lev

which taxinomic level should this test be run at

meta.lev.lim

how many underlying taxinomic levels should the analysis be limited to

Value

A DGEList object.

See Also

DGEList, manta

Examples

manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta")
load(manta.path)
			
compbiasTest(x, meta.lev='genus_sp')