matrixStats (version 0.53.0)

weightedMedian: Weighted Median Value

Description

Computes a weighted median of a numeric vector.

Usage

weightedMedian(x, w = NULL, idxs = NULL, na.rm = FALSE,
  interpolate = is.null(ties), ties = NULL, ...)

Arguments

x

a numeric vector containing the values whose weighted median is to be computed.

w

a vector of weights the same length as x giving the weights to use for each element of x. Negative weights are treated as zero weights. Default value is equal weight to all values.

idxs

A vector indicating subset of elements to operate over. If NULL, no subsetting is done.

na.rm

a logical value indicating whether NA values in x should be stripped before the computation proceeds, or not. If NA, no check at all for NAs is done. Default value is NA (for efficiency).

interpolate

If TRUE, linear interpolation is used to get a consistent estimate of the weighted median.

ties

If interpolate == FALSE, a character string specifying how to solve ties between two x's that are satisfying the weighted median criteria. Note that at most two values can satisfy the criteria. When ties is "min", the smaller value of the two is returned and when it is "max", the larger value is returned. If ties is "mean", the mean of the two values is returned. Finally, if ties is "weighted" (or NULL) a weighted average of the two are returned, where the weights are weights of all values x[i] <= x[k] and x[i] >= x[k], respectively.

...

Not used.

Value

Returns a numeric scalar.

Details

For the n elements x = c(x[1], x[2], ..., x[n]) with positive weights w = c(w[1], w[2], ..., w[n]) such that sum(w) = S, the weighted median is defined as the element x[k] for which the total weight of all elements x[i] < x[k] is less or equal to S/2 and for which the total weight of all elements x[i] > x[k] is less or equal to S/2 (c.f. [1]).

If w is missing then all elements of x are given the same positive weight. If all weights are zero, NA_real_ is returned.

If one or more weights are Inf, it is the same as these weights have the same weight and the others have zero. This makes things easier for cases where the weights are result of a division with zero.

The weighted median solves the following optimization problem:

$$\alpha^* = \arg_\alpha \min \sum_{i = 1}^{n} w_i |x_i-\alpha|$$ where \(x = (x_1, x_2, \ldots, x_n)\) are scalars and \(w = (w_1, w_2, \ldots, w_n)\) are the corresponding "weights" for each individual \(x\) value.

References

[1] T.H. Cormen, C.E. Leiserson, R.L. Rivest, Introduction to Algorithms, The MIT Press, Massachusetts Institute of Technology, 1989.

See Also

median, mean() and weightedMean().

Examples

# NOT RUN {
x <- 1:10
n <- length(x)

m1 <- median(x)                             # 5.5
m2 <- weightedMedian(x)                     # 5.5
stopifnot(identical(m1, m2))

w <- rep(1, times = n)
m1 <- weightedMedian(x, w)                  # 5.5 (default)
m2 <- weightedMedian(x, ties = "weighted")  # 5.5 (default)
m3 <- weightedMedian(x, ties = "min")       # 5
m4 <- weightedMedian(x, ties = "max")       # 6
stopifnot(identical(m1, m2))

# Pull the median towards zero
w[1] <- 5
m1 <- weightedMedian(x, w)                  # 3.5
y <- c(rep(0, times = w[1]), x[-1])         # Only possible for integer weights
m2 <- median(y)                             # 3.5
stopifnot(identical(m1, m2))

# Put even more weight on the zero
w[1] <- 8.5
weightedMedian(x, w)                # 2

# All weight on the first value
w[1] <- Inf
weightedMedian(x, w)                # 1

# All weight on the last value
w[1] <- 1
w[n] <- Inf
weightedMedian(x, w)                # 10

# All weights set to zero
w <- rep(0, times = n)
weightedMedian(x, w)                # NA

# Simple benchmarking
bench <- function(N = 1e5, K = 10) {
  x <- rnorm(N)
  gc()
  t <- c()
  t[1] <- system.time(for (k in 1:K) median(x))[3]
  t[2] <- system.time(for (k in 1:K) weightedMedian(x))[3]
  t <- t / t[1]
  names(t) <- c("median", "weightedMedian")
  t
}

print(bench(N =     5, K = 100))
print(bench(N =    50, K = 100))
print(bench(N =   200, K = 100))
print(bench(N =  1000, K = 100))
print(bench(N =  10e3, K =  20))
print(bench(N = 100e3, K =  20))
# }