NCI60_tiny

Cancer

The data come from a National Cancer Institute study of gene expression in
cell lines drawn from various sorts of cancer.

datasets

A complement to all editions of *Modern Data
Science with R*
(ISBN: 978-0367191498, publisher URL:
<https://www.routledge.com/Modern-Data-Science-with-R/Baumer-Kaplan-Horton/p/book/9780367191498>).
This package contains data and code to complete exercises and
reproduce examples from the text. It also facilitates connections
to the SQL database server used in the book. All editions of the book are
supported by this package.

Ben Baumer

mdsr

Complement to 'Modern Data Science with R'

Benjamin S. Baumer

Nicholas Horton

Daniel Kaplan

NCI60_tiny function

The expression data, NCI60_tiny is a dataframe of 41,078 gene probes (rows)
and 60 cell lines (columns). The first column, <code>Probe</code> gives the name
of the Agilent microarray probe. Each of the remaining columns is named for
a cell line. The value is the log-2 expression associated with that probe
for the cell line.
<dl>
<dt>Probe</dt>
<dd>the name of the Agilent microarray probe</dd>
</dl>For Cancer:<dl>
<dt>otherCellLine</dt>
<dd>a character vector giving the name of one cell line</dd><dt>cellLine</dt>
<dd>a character vector giving the name of another cell line</dd><dt>correlation</dt>
<dd>the correlation between the two cell lines. See <code><a href="/link/stats%3A%3Acor()?package=mdsr&version=0.2.8" data-mini-rdoc="mdsr::stats::cor()">stats::cor()</a></code></dd>
</dl>An object of class <code>tbl_df</code> (inherits from <code>tbl</code>, <code>data.frame</code>) with 1770 rows and 3 columns.

Format

Gene expression in cancer — NCI60_tiny

The expression data, NCI60_tiny is a dataframe of 41,078 gene probes (rows)
and 60 cell lines (columns). The first column, <code>Probe</code> gives the name
of the Agilent microarray probe. Each of the remaining columns is named for
a cell line. The value is the log-2 expression associated with that probe
for the cell line.
<dl>
<dt>Probe</dt>
<dd>the name of the Agilent microarray probe</dd>


</dl>

For Cancer:<dl>
<dt>otherCellLine</dt>
<dd>a character vector giving the name of one cell line</dd>

<dt>cellLine</dt>
<dd>a character vector giving the name of another cell line</dd>

<dt>correlation</dt>
<dd>the correlation between the two cell lines. See <code><a href='https://rdrr.io/r/stats/cor.html'>stats::cor()</a></code></dd>


</dl>

An object of class <code>tbl_df</code> (inherits from <code>tbl</code>, <code>data.frame</code>) with 1770 rows and 3 columns.

NCI60_tiny: Gene expression in cancer

Description

Usage

Arguments

Format

Details

References

See Also

Examples