conn

loci

pars

addNbAcc

alignGenus

calcDistToRef

check.TaxAgainstPhy

compare.phylo.backbone

coverage

dbAutoFillTaxonomy

dbconnect

dbDeleteSpec

dbReadDNAbin

dbReadReference

dbUpdateLocus

dbWriteDNAbin

dbWriteString

downloadSequences

EFetchHigherTaxon

EFetchLocus

esearch

extractLocus

filter.alignment

fixTaxonomy

force.mp

funX

getGeneRange

getLineage

getMaxDist

insert.tip.phylo

is.alignable

mafft.merge

markersGenbank

maxDist

maxDistMPI

meanPairwiseIdentity

megapteraHeatmap

myDist

ncbiLineage

NCBI.wrap

nucleotideOverlap

read.benchmark.db

revCompTest

select.seqs

slog

specCons

speciesConsensus

sortRanks

splitGiTaxon

sql.conform

sqlTaxonomyHeader

sql.wrap

stepAA

summary.sproj

supermatrix

tax2tree

term

unalignable

whereToInsert

write.dna.spectable

Internal <span class="pkg">megaptera</span> functions.

internal

megaptera-internal

Given a set of taxa and marker, the goal is build a complete and correct sequence alignment for phylogenetic analysis.

megaptera-internal: Internal MEGAPTERA Functions

Description

Arguments