meshr (version 1.8.0)

meshr-package: Enrichment analysis for MeSH terms.

Description

meshr package conducts a MeSH enrichment analysis employing gene-MeSH annotation data. A hypergeometric test accounting for a multiple tesing correction is used to find significantly enriched MeSH terms.

Details

Package:

meshr

Version:

1.2.6

Date:

3-20-2015

biocViews:

AnnotationData, FunctionalAnnotation, Bioinformatics, Statistics, Annotation, MultipleComparisons

Depends:

R (>= 3.0.1), cummeRbund, org.Hs.eg.db, fdrtool, Category, BiocGenerics, methods, MeSH.db, MeSH.AOR.db, MeSH.PCR.db, MeSHDbi, MeSH.Hsa.eg.db, MeSH.Aca.eg.db, MeSH.Atu.K84.eg.db, MeSH.Bsu.168.eg.db, MeSH.Syn.eg.db

Imports:

Suggests:

License:

Artistic-2.0

Index:

meshHyperGTest performs a hypergeometric statistical test.

Further information is available in the vignettes.

See Also

MeSHHyperGParams-class, MeSHHyperGResult-class, meshHyperGTest

Examples

ls("package:meshr")