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metaSeq (version 1.12.0)

metaSeq-package: Meta-analysis of RNA-Seq count data in multiple studies

Description

Meta-analysis for multiple studies's RNA-Seq count data. In this package, probability of gene differential is calculated by NOISeq, which is customized for one-sided test. One-sided probabilities are integrated by Fisher's method (without weighting) or Stouffer's method (with weighting by sample-size). P-values or probabilities calculated by non-NOISeq methods are also applicable by other.oneside.pvalues.

Arguments

Details

Package:
metaSeq
Type:
Package
Version:
1.3.2
Date:
2013-12-2
License:
Artistic-2.0

References

Tarazona, S. and Garcia-Alcalde, F. and Dopazo, J. and Ferrer, A. and Conesa, A. (2011) Differential expression in RNA-seq: A matter of depth. Genome Research, 21(12): 2213-2223

See Also

readData, noiseq