fasta_headers

Get line numbers of FASTA headers without reading whole fasta file into RAM.

internal

A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).

Zachary Foster

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data

Niklaus Grunwald

Rob Gilmore

fasta_headers function

<dl><dt>file_path</dt>
<dd>(<code>character</code> of length 1) The path to a file to read.</dd>
<dt>buffer_size</dt>
<dd>(<code>numeric</code> of length 1) The number of lines in each chunk.</dd>
<dt>return_headers</dt>
<dd>(<code>logical</code> of length 1) If <code>TRUE</code>, name the result with the headers.</dd></dl>

Arguments

Get line numbers of FASTA headers — fasta_headers

<dl>

<dt>file_path</dt>
<dd>(<code>character</code> of length 1) The path to a file to read.</dd>


<dt>buffer_size</dt>
<dd>(<code>numeric</code> of length 1) The number of lines in each chunk.</dd>


<dt>return_headers</dt>
<dd>(<code>logical</code> of length 1) If <code>TRUE</code>, name the result with the headers.</dd>

</dl>

fasta_headers: Get line numbers of FASTA headers

Description

Usage

Value

Arguments