Attempts to save the abundance matrix stored as a table in a taxmap object in the
dada2 ASV abundance matrix format. If the taxmap object was created using
parse_dada2
, then it should be able to replicate the format
exactly with the default settings.
make_dada2_asv_table(obj, asv_table = "asv_table", asv_id = "asv_id")
A numeric matrix
with rows as samples and columns as ASVs
A taxmap object
The name of the abundance matrix in the taxmap object to use.
The name of the column in asv_table
with unique ASV ids or sequences.
Other writers:
make_dada2_tax_table()
,
write_greengenes()
,
write_mothur_taxonomy()
,
write_rdp()
,
write_silva_fasta()
,
write_unite_general()