make_dada2_tax_table

Attempts to save the taxonomy information assocaited with an abundance matrix in a taxmap object
in the dada2 taxonomy matrix format. If the taxmap object was created using
<code>parse_dada2</code>, then it should be able to replicate the format exactly with the
default settings.

A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).

Zachary Foster

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data

Niklaus Grunwald

Rob Gilmore

make_dada2_tax_table function

<dl><dt>obj</dt>
<dd>A taxmap object</dd>
<dt>asv_table</dt>
<dd>The name of the abundance matrix in the taxmap object to use.</dd>
<dt>asv_id</dt>
<dd>The name of the column in <code>asv_table</code> with unique ASV ids or sequences.</dd></dl>

Arguments

Make a imitation of the dada2 taxonomy matrix — make_dada2_tax_table

<dl>

<dt>obj</dt>
<dd>A taxmap object</dd>


<dt>asv_table</dt>
<dd>The name of the abundance matrix in the taxmap object to use.</dd>


<dt>asv_id</dt>
<dd>The name of the column in <code>asv_table</code> with unique ASV ids or sequences.</dd>

</dl>

make_dada2_tax_table: Make a imitation of the dada2 taxonomy matrix

Description

Usage

Value

Arguments

See Also