parse_dataset

Parse options specifying datasets in taxmap objects

internal

A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).

Zachary Foster

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data

Niklaus Grunwald

Rob Gilmore

parse_dataset function

<dl><dt>obj</dt>
<dd>The taxmap object.</dd>
<dt>data</dt>
<dd>The name/index of datasets in a taxmap object to use. Can also be a logical vector
of length equal to the number of datasets.</dd>
<dt>must_be_valid</dt>
<dd>If TRUE, all datasets specified must be valid or an error occurs.</dd>
<dt>needed</dt>
<dd>If TRUE, at least one dataset must be specified or an error occurs.</dd>
<dt>rm_na</dt>
<dd>If TRUE, then invalid datasets do result in NAs in the output.</dd></dl>

Arguments

Parse options specifying datasets — parse_dataset

<dl>

<dt>obj</dt>
<dd>The taxmap object.</dd>


<dt>data</dt>
<dd>The name/index of datasets in a taxmap object to use. Can also be a logical vector
of length equal to the number of datasets.</dd>


<dt>must_be_valid</dt>
<dd>If TRUE, all datasets specified must be valid or an error occurs.</dd>


<dt>needed</dt>
<dd>If TRUE, at least one dataset must be specified or an error occurs.</dd>


<dt>rm_na</dt>
<dd>If TRUE, then invalid datasets do result in NAs in the output.</dd>

</dl>

parse_dataset: Parse options specifying datasets

Description

Usage

Value

Arguments