parse_greengenes

A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).

Zachary Foster

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data

Niklaus Grunwald

Rob Gilmore

parse_greengenes function

<dl><dt>tax_file</dt>
<dd>(<code>character</code> of length 1) The file path to the
greengenes taxonomy file.</dd>
<dt>seq_file</dt>
<dd>(<code>character</code> of length 1) The file path to the
greengenes sequence fasta file. This is optional.</dd></dl>

Arguments

Parse Greengenes release — parse_greengenes

<dl>

<dt>tax_file</dt>
<dd>(<code>character</code> of length 1) The file path to the
greengenes taxonomy file.</dd>


<dt>seq_file</dt>
<dd>(<code>character</code> of length 1) The file path to the
greengenes sequence fasta file. This is optional.</dd>

</dl>

parse_greengenes: Parse Greengenes release

Description

Usage

Value

Arguments

Details

See Also