parse_raw_heirarchies_to_taxonomy

Infer edge list and unique taxa from hierarchies.

internal

A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).

Zachary Foster

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data

Niklaus Grunwald

Rob Gilmore

parse_raw_heirarchies_to_taxonomy function

<dl><dt>named_by_rank</dt>
<dd>(`TRUE`/`FALSE`) If `TRUE` and the input is a list of
vectors with each vector named by ranks, include that rank info in the
output object, so it can be accessed by `out$taxon_ranks()`. If `TRUE`,
taxa with different ranks, but the same name and location in the taxonomy,
will be considered different taxa.</dd></dl>

Arguments

Infer edge list from hierarchies composed of character vectors — parse_raw_heirarchies_to_taxonomy

<dl>

<dt>named_by_rank</dt>
<dd>(`TRUE`/`FALSE`) If `TRUE` and the input is a list of
vectors with each vector named by ranks, include that rank info in the
output object, so it can be accessed by `out$taxon_ranks()`. If `TRUE`,
taxa with different ranks, but the same name and location in the taxonomy,
will be considered different taxa.</dd>

</dl>

parse_raw_heirarchies_to_taxonomy: Infer edge list from hierarchies composed of character vectors

Description

Usage

Value

Arguments