metacoder (version 0.3.7)

taxon_ranks: Get taxon ranks

Description

Return the taxon ranks in a [taxonomy()] or [taxmap()] object. They are in the order taxa appear in the edge list.

obj$taxon_ranks()
taxon_ranks(obj)

Arguments

obj

The [taxonomy()] or [taxmap()] object.

See Also

Other taxonomy data functions: classifications(), id_classifications(), is_branch(), is_internode(), is_leaf(), is_root(), is_stem(), map_data(), map_data_(), n_leaves(), n_leaves_1(), n_subtaxa(), n_subtaxa_1(), n_supertaxa(), n_supertaxa_1(), taxon_ids(), taxon_indexes(), taxon_names()

Examples

# Get ranks for each taxon
taxon_ranks(ex_taxmap)

# Filter by rank
filter_taxa(ex_taxmap, taxon_ranks == "family", supertaxa = TRUE)