metadynminer3d (version 0.0.2)

plotheights.hillsfile3d: Plot evolution of heights of hills in hillsfile3d object

Description

`plotheights.hillsfile3d` plots evolution of heights of hills. In well tempered metadynamics hill heights decrees with flooding of the free energy surface. Evolution of heights may be useful to evaluate convergence of the simulation.

Usage

# S3 method for hillsfile3d
plotheights(hills, ignoretime = FALSE, xlab = NULL,
  ylab = NULL, xlim = NULL, ylim = NULL, main = NULL, sub = NULL,
  col = "black", asp = NULL, lwd = 1, axes = TRUE)

Arguments

hills

hillsfile object.

ignoretime

time in the first column of the HILLS file will be ignored.

xlab

a title for the x axis: see 'title'.

ylab

a title for the y axis: see 'title'.

xlim

numeric vector of length 2, giving the x coordinates range.

ylim

numeric vector of length 2, giving the y coordinates range.

main

an overall title for the plot: see 'title'.

sub

a sub title for the plot: see 'title'.

col

color code or name, see 'par'.

asp

the y/x aspect ratio, see 'plot.window'.

lwd

line width for drawing symbols see 'par'.

axes

a logical value indicating whether both axes should be drawn on the plot.

Examples

# NOT RUN {
plotheights(acealanme3d)
# }