summary.hillsfile3d

object

<p>further arguments passed to or from other methods.</p>

<p>`summary.hillsfile3d` prints dimensionality, size and collective variable ranges of a hillsfile3d object.</p>

Metadynamics is a state of the art biomolecular simulation technique.
'Plumed' Tribello, G.A. et al. (2014) <doi:10.1016/j.cpc.2013.09.018> program makes
it possible to perform metadynamics using various simulation codes. The results of
metadynamics done in 'Plumed' can be analyzed by 'metadynminer'. The package
'metadynminer' reads 1D and 2D metadynamics hills files from 'Plumed' package.
As an addendum, 'metadynaminer3d' is used to visualize 3D hills. It uses
a fast algorithm by Hosek, P. and Spiwok, V. (2016) <doi:10.1016/j.cpc.2015.08.037>
to calculate a free energy surface from hills. Minima can be located and plotted on
the free energy surface. Free energy surfaces and minima can be plotted to produce
publication quality images.

Vojtech Spiwok

summary.hillsfile3d: Print summary for hillsfile3d

Description

Usage

Arguments

Examples