metafolio (version 0.1.0)

plot_sim_ts: Plot various time series from a simulation run

Description

This function lets you quickly visualize the time series of output from a simulation run.

Usage

plot_sim_ts(x, pal = rev(gg_color_hue(x$n_pop)), years_to_show = 30,
  burn = 1:50, shade_years = NULL, adj = 0.02, add_units = FALSE,
  yticks = rep(list(NA), 10), oma = c(4, 4.5, 1, 1))

Arguments

x

A list output object from a simulation run of link{meta_sim}.

pal

A colour palette for the lines. One colour per line (each line is a population time series).

years_to_show

How many years to plot after the burn in period.

burn

The number of years to discard as burn in at the beginning of the time series.

adj

adj parameter to pass to mtext for panel labels

shade_years

Shade some years? Give a vector. Shading will be applied from the minimum to maximum value. Can be used to show burn in period.

add_units

Should the units be added to the y axis?

yticks

Position of ticks on the Y axis.

oma

oma vector to pass to par for outer margin space.

Examples

# NOT RUN {
arma_env_params <- list(mean_value = 16, ar = 0.1, sigma_env = 2, ma = 0)
base1 <- meta_sim(n_pop = 10, env_params = arma_env_params, env_type =
  "arma", assess_freq = 5, decrease_b = 10)
plot_sim_ts(base1, years_to_show = 70, burn = 1:30)
# }