MRcounts

MRcounts,MRexperiment-method

logical indicating whether or not to return normalized counts.

norm

TRUE/FALSE whether or not to log2 transform scale.


The counts slot holds the raw count data representing (along the rows) the
number of reads annotated for a particular feature and (along the columns)
the sample.


metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are
differentially abundant between two or more groups of multiple
samples. metagenomeSeq is designed to address the effects of
both normalization and under-sampling of microbial communities
on disease association detection and the testing of feature
correlations.

MRcounts: Accessor for the counts slot of a MRexperiment object

Description

Usage

Arguments

Value

Examples