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metagenomeSeq (version 1.14.0)

MRexperiment2biom: MRexperiment to biom objects

Description

Wrapper to convert MRexperiment objects to biom objects.

Usage

MRexperiment2biom(obj, id = NULL, norm = FALSE, log = FALSE, sl = 1000, qiimeVersion = TRUE)

Arguments

obj
The MRexperiment object.
id
Optional id for the biom matrix.
norm
Normalized data?
log
Logged data?
sl
scaling factor for normalized counts.
qiimeVersion
Format fData according to QIIME specifications (assumes only taxonomy in fData).

Value

A biom object.

See Also

load_meta load_phenoData newMRexperiment load_biom biom2MRexperiment