calcZeroAdjustment

A matrix with parameters from the log-normal fit

fitln

A matrix with parameters from the logistic fit

fitzero

coef

exclude


Calculate the log ratio of average marginal probabilities for each sample
having a positive count. This becomes the adjustment factor for the log 
fold change.


metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are
differentially abundant between two or more groups of multiple
samples. metagenomeSeq is designed to address the effects of
both normalization and under-sampling of microbial communities
on disease association detection and the testing of feature
correlations.

calcZeroAdjustment: Calculate the zero-inflated component's adjustment factor

Description

Usage

Arguments

See Also